/*
 * This file is part of the Popitam software
 * Copyright (C) 2009 Swiss Institute of Bioinformatics
 *
 * This program is free software; you can redistribute it and/or modify
 * it under the terms of the GNU General Public License as published by
 * the Free Software Foundation; either version 2 of the License, or
 * (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 59 Temple Place, Suite 330, 
 * Boston, MA 02111-1307, USA.
 */

#ifndef __SCORE_H__
#define __SCORE_H__

#include "file.h"
#include "runManagerParameters.h"

// *********************************************************************************************** //


class score {  

  public :
  
  double  lakScore1_a;
  double  modScore1_b;
  double  covScore1_c;                 
  double  covScore2_d;                 
  double  covScore3_e;                 
  double  intScore1_f;                 
  double  perScore1_g;                 
  double  famScore1_h;
  double  errScore1_i;          
  double  redScore1_j;
  double  serScore1_k; 
  double  serScore2_l;
  double  finArrScore;


   score();
  ~score();
  void init();
  void write(File&);
};

/******************************************************************************/


#endif
